ABOUT THIS RECORDspecies: Taraxacum officinale
source: microPC, original name: miR156
Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCA miRNA* CTCACTTCTCTTGCTGTC mismatches: 0 bulges: 2 |
pre-miRNA
CGACAGAAGAGAGTGAGCATATGCAAGCAATTGTATAGAGAGATATGCTCTTGTTGTAATTATGATGCGTGTGCTCACTTCTCTTGCTGTC
dot-bracket secondary structure
)(((((((((((((((((((((((((((((..(((((......)))))..)))))..........))))))))))))).)))))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGACAGAAGAGAGTGAGCATATGCAAGCAATTGTATAGAGAGATATGCTCTTGTTGTAATTATGATGCGTGTGCTCACTTCTCTTGCTGTC
dot-bracket secondary structure
)(((((((((((((((((((((((((((((..(((((......)))))..)))))..........))))))))))))).)))))).)))))
SIMILARITIES| miRBase vvi-MIR156d: 4.0E-6 PMRD vvi-miR156d: 4.0E-6 microPC miR156: 4.0E-46 | UniProt no hits RFAM 6mir-156: 8.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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