ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAAAGAGAGCAC miRNA* GCTCTCTTTACTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).)))))))).
SIMILARITIES| miRBase ath-MIR156h: 2e-26 PMRD ath-miR156h: 2e-26 microPC miR157: 2e-42 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST045310) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
