miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST045619
species: Brassica napus
miRNA family: MIR156
source: microPC, original name: miR156

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAAAGAGAGCAC

miRNA*
 GCTCTCTTTACTTCTGTCA

mismatches: 1
bulges: 1
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pre-miRNA
 TGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTCA

dot-bracket secondary structure
.((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).)))))))).


SIMILARITIES
miRBase ath-MIR156h: 2e-26

PMRD ath-miR156h: 2e-26

microPC miR157: 2e-42		UniProt no hits

RFAM no hits

Identical with: miR157 from microPC (MNEST045310)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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