ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR446
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATGTGGGAAATG miRNA* TTTTTCGCATTCATATTTGATGTT mismatches: 2 bulges: 1 |
pre-miRNA
CATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATG
dot-bracket secondary structure
(((((..((((((((((((.(((((((((.((((((((...........)))))))).)))))))))))))))))))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATG
dot-bracket secondary structure
(((((..((((((((((((.(((((((((.((((((((...........)))))))).)))))))))))))))))))))..)))))
SIMILARITIES| miRBase osa-MIR808: 3e-25 PMRD osa-miR808: 3e-25 microPC miR808: 1e-43 | UniProt no hits RFAM MIR1122: 6e-24 |
Identical with: miR808 from microPC (MNEST046775) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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