miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST045717
species: Oryza sativa
source: microPC, original name: miR446

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCAATATGAATGTGGGAAATG

miRNA*
 TTTTTCGCATTCATATTTGATGTT

mismatches: 2
bulges: 1
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pre-miRNA
 CATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATG

dot-bracket secondary structure
(((((..((((((((((((.(((((((((.((((((((...........)))))))).)))))))))))))))))))))..)))))


SIMILARITIES
miRBase osa-MIR808: 3e-25

PMRD osa-miR808: 3e-25

microPC miR808: 1e-43		UniProt no hits

RFAM MIR1122: 6e-24

Identical with: miR808 from microPC (MNEST046775)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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