ABOUT THIS RECORDspecies: Centaurea maculosa
source: microPC, original name: miR160
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCAAGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..((((((((((..(.(((.((((.((.....)).)))).))).)..))))))))))..))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..((((((((((..(.(((.((((.((.....)).)))).))).)..))))))))))..))))))).)).
SIMILARITIES| miRBase ptc-MIR160c: 1e-21 PMRD ptc-miR160c: 1e-21 microPC miR160: 9e-41 | UniProt no hits RFAM mir-160: 5e-18 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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