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Species belonging to selected taxon:
Carthamus tinctorius
,
Centaurea maculosa
,
Centaurea solstitialis
ABOUT THIS RECORD
ID:
MNEST045760
species:
Centaurea maculosa
source:
microPC, original name:
miR160
Taxonomy by NCBI:
Centaurea maculosa
Centaurea
Centaureinae
Cardueae
Carduoideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCC
miRNA*
CGTATGAGGAGCCAAGCA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGCCTGGCTCCCTGTATGCC
ATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGG
CGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..(((((((
(((..(.(((.((((.((.....)).)))).))).)..)))))
)))))..))))))).)).
SIMILARITIES
miRBase
ptc-MIR160c
:
1e-21
PMRD
ptc-miR160c
:
1e-21
microPC
miR160
:
9e-41
UniProt
no hits
RFAM
mir-160: 5e-18
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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