ABOUT THIS RECORDspecies: Lactuca saligna
source: microPC, original name: miR159
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATA mismatches: 2 bulges: 0 |
pre-miRNA
ATAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTG
GCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
)(((((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)
)..).)))).))))).)).)))..))))))..))).)))))))).)))))))..)))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATAGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTG
GCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
)(((((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)
)..).)))).))))).)).)))..))))))..))).)))))))).)))))))..)))))))))))
SIMILARITIES| miRBase rco-MIR159: 1.0E-10 PMRD vvi-miR159c: 3.0E-8 microPC miR159: 2.0E-90 | UniProt no hits RFAM 9MIR159: 3.0E-9 |
Identical with: miR319 from microPC (MNEST045780) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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