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Species belonging to selected taxon:
Cichorium intybus
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Cichorium endivia
ABOUT THIS RECORD
ID:
MNEST045765
species:
Lactuca saligna
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Lactuca saligna
Lactuca
Lactucinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA
miRNA*
GAGCTCCTTGAAGTCCAATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TA
GAGCTCCTTGAAGTCCAATA
GAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTG
GCTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTT
TTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
((
(((((((((..(((((((.(
(((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)
)..).)))).))))).)).)))..))))))..))).)))))))).
)))))))..)))))))))))
SIMILARITIES
miRBase
rco-MIR159
:
0.0000000001
PMRD
vvi-miR159c
:
0.00000003
microPC
miR159
:
2e-90
UniProt
no hits
RFAM
MIR159: 0.000000003
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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