ABOUT THIS RECORDspecies: Populus x canadensis
source: microPC, original name: miR472
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCCCAACTCCACCCATCCC miRNA* GATGGGTGAGTGGGGAAGATA mismatches: 2 bulges: 1 |
pre-miRNA
GGATGGGTGAGTGGGGAAGATAACTAAGCTGTGTTTGTTATTTTCCCAACTCCACCCATCCC
dot-bracket secondary structure
((((((((((((.(((((((((((.((((...))))))))))))))).))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGATGGGTGAGTGGGGAAGATAACTAAGCTGTGTTTGTTATTTTCCCAACTCCACCCATCCC
dot-bracket secondary structure
((((((((((((.(((((((((((.((((...))))))))))))))).))).))))))))).
SIMILARITIES| miRBase ptc-MIR472b: 3e-27 PMRD ptc-miR472b: 3e-27 microPC miR472: 0.0000007 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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