miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST045804
species: Populus x canadensis
source: microPC, original name: miR472

Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTCCCAACTCCACCCATCCC

miRNA*
GATGGGTGAGTGGGGAAGATA

mismatches: 2
bulges: 1

View larger
pre-miRNA
GGATGGGTGAGTGGGGAAGATAACTAAGCTGTGTTTGTTATTTTCCCAACTCCACCCATCCC

dot-bracket secondary structure
((((((((((((.(((((((((((.((((...))))))))))))))).))).))))))))).


SIMILARITIES
miRBase ptc-MIR472b: 3e-27

PMRD ptc-miR472b: 3e-27

microPC miR472: 0.0000007
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;