ABOUT THIS RECORDspecies: Fragaria vesca
miRNA family: MIR159
source: microPC, original name: miR159
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
TGGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAG
GCTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(((((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).)))))
)..)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAG
GCTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(((((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).)))))
)..)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..)))))))))))
SIMILARITIES| miRBase ptc-MIR159b: 6e-16 PMRD ptc-miR159b: 6e-16 microPC miR159: 4e-94 | UniProt no hits RFAM MIR159: 7e-16 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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