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Species belonging to selected taxon:

Fragaria vesca, Fragaria x ananassa, Humulus lupulus, Prunus armeniaca, Prunus persica



ABOUT THIS RECORD

ID: MNEST045817
species: Fragaria vesca
miRNA family: MIR159
source: microPC, original name: miR159

Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
TGGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAG
GCTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCTA


dot-bracket secondary structure
(((((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).)))))
)..)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..)))))))))))



SIMILARITIES
miRBase ptc-MIR159b: 6e-16

PMRD ptc-miR159b: 6e-16

microPC miR159: 4e-94
UniProt no hits

RFAM MIR159: 7e-16

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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