ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR444
source: microPC, original name: miR444
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGTCTCAAACTTGCTGCC miRNA* CAGCCAGTTTGAGATAACAAT mismatches: 1 bulges: 0 |
pre-miRNA
GGCAGCCAGTTTGAGATAACAATTGTGTATTTTGCAAAGAATTGATTGCTCAACTCCATGGGAGGCTGTAGTGCCAAATGTGATGTATTCTAACTGTTGT
CTCAAACTTGCTGCC
dot-bracket secondary structure
((((((.((((((((((((((.(((.((((.(..((..((.((((....)))).)).......(((......)))...))..).))))..))).))))))
)))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGCAGCCAGTTTGAGATAACAATTGTGTATTTTGCAAAGAATTGATTGCTCAACTCCATGGGAGGCTGTAGTGCCAAATGTGATGTATTCTAACTGTTGT
CTCAAACTTGCTGCC
dot-bracket secondary structure
((((((.((((((((((((((.(((.((((.(..((..((.((((....)))).)).......(((......)))...))..).))))..))).))))))
)))))))).))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
