ABOUT THIS RECORDspecies: Populus euphratica
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACCTGGAATACATG mismatches: 1 bulges: 1 |
pre-miRNA
GCAGGAGCGACCTGGAATACATGTGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
)((((.((((((((((((((((((..((((.((((....))))......)))).)))))))))).)))))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCAGGAGCGACCTGGAATACATGTGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
)((((.((((((((((((((((((..((((.((((....))))......)))).)))))))))).)))))))).))))
SIMILARITIES| miRBase ptc-MIR398c: 1.0E-24 PMRD ptc-miR398c: 1.0E-24 microPC miR398: 3.0E-37 | UniProt no hits RFAM 8MIR398: 6.0E-8 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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