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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST046116
species:
Populus euphratica
miRNA family:
MIR398
source:
microPC, original name:
miR398
Taxonomy by NCBI:
Populus euphratica
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCTG
miRNA*
GGAGCGACCTGGAATACATG
mismatches:
1
bulges:
1
View larger
pre-miRNA
CA
GGAGCGACCTGGAATACATG
TGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACA
TGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((
((.(((((((((((((((((
(..((((.((((....))))......)))).)))
))))))).)))))))).))))
SIMILARITIES
miRBase
ptc-MIR398c
:
1e-24
PMRD
ptc-miR398c
:
1e-24
microPC
miR398
:
3e-37
UniProt
no hits
RFAM
MIR398: 0.00000006
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record