ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCATGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..))))))).)).
SIMILARITIES| miRBase bra-MIR160a: 1e-39 PMRD bra-miR160a: 1e-39 microPC miR160: 1e-39 | UniProt no hits RFAM mir-160: 7e-17 |
Identical with: bra-MIR160a from miRBase (MNEST040312) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
