miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046225
species: Brassica rapa
miRNA family: MIR160
source: microPC, original name: miR160

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTATGAGGAGCCATGCA

mismatches: 4
bulges: 0
View larger
pre-miRNA
 TGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCATGCA

dot-bracket secondary structure
.((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..))))))).)).


SIMILARITIES
miRBase bra-MIR160a: 1e-39

PMRD bra-miR160a: 1e-39

microPC miR160: 1e-39		UniProt no hits

RFAM mir-160: 7e-17

Identical with: bra-MIR160a from miRBase (MNEST040312)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;