ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1311
source: microPC, original name: miR1311
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGAGTTTTGCCAGTTCCGCC miRNA* CGGGCTGGCATAACTCCGCCC mismatches: 3 bulges: 1 |
pre-miRNA
GGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCC
dot-bracket secondary structure
((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCC
dot-bracket secondary structure
((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))
SIMILARITIES| miRBase pta-MIR1311: 6e-32 PMRD pta-miR1311: 6e-32 microPC miR1311: 0.00000005 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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