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ABOUT THIS RECORD
ID:
MNEST046256
species:
Gossypium hirsutum
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Gossypium hirsutum
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGCCGCGCCAATATCAC
miRNA*
GATGTTGGTGAGGTTCAAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GC
GATGTTGGTGAGGTTCAAT
CCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGAT
TGAGCCGCGCCAATATCAC
dot-bracket secondary structure
..
((((((((((.((((((((
(.((.((((..(((((((.(((...))))))))))...)).)))).)))
)))))).))))))))))..
SIMILARITIES
miRBase
tcc-MIR171c
:
2e-38
PMRD
ghr-miR171
:
4e-43
microPC
miR171
:
2e-45
UniProt
no hits
RFAM
MIR171_1: 1e-25
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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