ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGTCAATATC miRNA* TATTGGCCTGGTTCATTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).)))))))))
SIMILARITIES| miRBase bna-MIR171g: 0.00000006 PMRD bna-miR171g: 0.00000006 microPC miR171: 6e-42 | UniProt no hits RFAM MIR171_1: 0.000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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