miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046257
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR171
source: microPC, original name: miR171

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGTCAATATC

miRNA*
 TATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATC

dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).)))))))))


SIMILARITIES
miRBase bna-MIR171g: 0.00000006

PMRD bna-miR171g: 0.00000006

microPC miR171: 6e-42		UniProt no hits

RFAM MIR171_1: 0.000004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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