miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST046257
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR171
source: microPC, original name: miR171

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGTCAATATC

miRNA*
TATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0

View larger
pre-miRNA
GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATC

dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).)))))))))


SIMILARITIES
miRBase bna-MIR171g: 0.00000006

PMRD bna-miR171g: 0.00000006

microPC miR171: 6e-42
UniProt no hits

RFAM MIR171_1: 0.000004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;