ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR172
source: microPC, original name: miR172
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* CAGCGTCCTCAAGATTCACATCC mismatches: 2 bulges: 3 |
pre-miRNA
GCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCTTTTTTGCTTGCCTTGGTTTTTGTGAGGGAGAATCTTGATGATGC
TGCA
dot-bracket secondary structure
((((((((.(((((((((...(((..(((((((((....(((((((.............)))).)))....))))))).)).)))))))))))).)))))
))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCTTTTTTGCTTGCCTTGGTTTTTGTGAGGGAGAATCTTGATGATGC
TGCA
dot-bracket secondary structure
((((((((.(((((((((...(((..(((((((((....(((((((.............)))).)))....))))))).)).)))))))))))).)))))
))).
SIMILARITIES| miRBase csi-MIR172a: 9e-20 PMRD zma-miR172d: 0.00008 microPC miR172: 9e-20 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
