miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046277
species: Citrus sinensis
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCA

miRNA*
 CAGCGTCCTCAAGATTCACATCC

mismatches: 2
bulges: 3
View larger
pre-miRNA
 GCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCTTTTTTGCTTGCCTTGGTTTTTGTGAGGGAGAATCTTGATGATGC
TGCA

dot-bracket secondary structure
((((((((.(((((((((...(((..(((((((((....(((((((.............)))).)))....))))))).)).)))))))))))).)))))
))).


SIMILARITIES
miRBase csi-MIR172a: 9e-20

PMRD zma-miR172d: 0.00008

microPC miR172: 9e-20		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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