ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGATACTAAGAACACATG mismatches: 3 bulges: 1 |
pre-miRNA
GGAGTGATACTAAGAACACATGTGATGGAATGAGTGCATTGATATGCTGTATGGTACAACTCTTTGATGCACATTTTTTTTCATTTGTGTTCTCAGGTCA
CCCCT
dot-bracket secondary structure
((.(((((.((.((((((((.((((..(((...((((((..(...(.((((...)))).)...)..))))))...)))..)))).)))))))).))))))
).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GGAGTGATACTAAGAACACATGTGATGGAATGAGTGCATTGATATGCTGTATGGTACAACTCTTTGATGCACATTTTTTTTCATTTGTGTTCTCAGGTCA
CCCCT
dot-bracket secondary structure
((.(((((.((.((((((((.((((..(((...((((((..(...(.((((...)))).)...)..))))))...)))..)))).)))))))).))))))
).)).
SIMILARITIES| miRBase aqc-MIR398a: 0.000001 PMRD aqc-miR398a: 0.000001 microPC miR398: 1e-40 | UniProt no hits RFAM MIR398: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
