ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR399
source: microPC, original name: miR399
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCC miRNA* GCGACTCTCCCTTGGCAAA mismatches: 3 bulges: 0 |
pre-miRNA
GGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGAATTGCCC
dot-bracket secondary structure
(((((.(((((.(((((((((((((..(((.......)))..(((((......))))).))))).)))))))).))))).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGAATTGCCC
dot-bracket secondary structure
(((((.(((((.(((((((((((((..(((.......)))..(((((......))))).))))).)))))))).))))).))))).
SIMILARITIES| miRBase vvi-MIR399h: 0.00002 PMRD vvi-miR399h: 0.00002 microPC miR399: 1e-43 | UniProt no hits RFAM mir-399: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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