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ABOUT THIS RECORD
ID:
MNEST046536
species:
Citrus reticulata
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Citrus reticulata
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCAC
miRNA*
GATATTGGTGCGGTTCAATA
mismatches:
4
bulges:
0
View larger
pre-miRNA
GATATTGGTGCGGTTCAATA
AGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGA
TTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
((((((((..(((((((((.
(((((.(((.((((((......)))))).))).))))).)
))))))))..))))))))..
SIMILARITIES
miRBase
crt-MIR171
:
4e-40
PMRD
vvi-miR171c
:
4e-18
microPC
miR171
:
4e-40
UniProt
no hits
RFAM
MIR171_1: 2e-17
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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