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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046536
species: Citrus reticulata
source: microPC, original name: miR171

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCAC

miRNA*
 GATATTGGTGCGGTTCAATA

mismatches: 4
bulges: 0
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pre-miRNA
 GATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCAC

dot-bracket secondary structure
((((((((..(((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))..))))))))..


SIMILARITIES
miRBase crt-MIR171: 4e-40

PMRD vvi-miR171c: 4e-18

microPC miR171: 4e-40		UniProt no hits

RFAM MIR171_1: 2e-17

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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