ABOUT THIS RECORDspecies: Populus nigra
source: microPC, original name: miR1030
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGCACCTGCACCTGCACC miRNA* TGCAGGTGCAAATGCAG mismatches: 4 bulges: 0 |
pre-miRNA
CCTGCACCTGCACCTGCACCTCAACTAAGCTTATTAGTTTCCATATCTAACACTCTATATCTAATTGTCCCACATACTGTATCGACAGAACTTGATTTTG
TTTGTGGAGTCAAAAACAAAACAAACGCAAAAGATGCAGGTGCAAATGCAG
dot-bracket secondary structure
.(((((..((((((((((.((.((((((.....)))))).........................(((.((((((.((...(((((......)))))...)
).))))).).)))..................)).))))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CCTGCACCTGCACCTGCACCTCAACTAAGCTTATTAGTTTCCATATCTAACACTCTATATCTAATTGTCCCACATACTGTATCGACAGAACTTGATTTTG
TTTGTGGAGTCAAAAACAAAACAAACGCAAAAGATGCAGGTGCAAATGCAG
dot-bracket secondary structure
.(((((..((((((((((.((.((((((.....)))))).........................(((.((((((.((...(((((......)))))...)
).))))).).)))..................)).))))))))))..)))))
SIMILARITIES| miRBase ptc-MIR530b: 8e-52 PMRD ptc-miRf11519-akr: 8e-52 microPC miR1030: 1e-81 | UniProt no hits RFAM MIR530: 2e-50 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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