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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST046654
species:
Populus nigra
source:
microPC, original name:
miR1030
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTGCACCTGCACCTGCACC
miRNA*
TGCAGGTGCAAATGCAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
CCTGCACCTGCACCTGCACC
TCAACTAAGCTTATTAGTTTCCATATCTAACACTCTATATCTAATTGTCCCACATACTGTATCGACAGAACTTGATTTTG
TTTGTGGAGTCAAAAACAAAACAAACGCAAAAGA
TGCAGGTGCAAATGCAG
dot-bracket secondary structure
.(((((..((((((((((.(
(.((((((.....)))))).........................(((.((((((.((...(((((......)))))...)
).))))).).)))..................)).
))))))))))..)))))
SIMILARITIES
miRBase
ptc-MIR530b
:
8e-52
PMRD
ptc-miRf11519-akr
:
8e-52
microPC
miR1030
:
1e-81
UniProt
no hits
RFAM
MIR530: 2e-50
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record