ABOUT THIS RECORDspecies: Saccharum officinarum
source: microPC, original name: miR168
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGA mismatches: 3 bulges: 1 |
pre-miRNA
TCGCTTGGGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
((((((((((((..(((((.(((...((((.....)))).))).)))))..)))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
((((((((((((..(((((.(((...((((.....)))).))).)))))..)))).))))))))
SIMILARITIES| miRBase sof-MIR168b: 9e-31 PMRD sof-miR168b: 9e-31 microPC miR168: 1e-26 | UniProt no hits RFAM MIR168: 3e-25 |
Identical with: sof-MIR168b from miRBase (MNEST042460) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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