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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST046702
species:
Saccharum officinarum
source:
microPC, original name:
miR168
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGGCAGATCGGGAC
miRNA*
CCCGCCTTGCACCAAGTGA
mismatches:
3
bulges:
1
View larger
pre-miRNA
TCGCTTGGGCAGATCGGGAC
CCGCCGCCCGGCCGACGGGACGGAT
CCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
((((((((((((..(((((.
(((...((((.....)))).))).)
))))..)))).))))))))
SIMILARITIES
miRBase
sof-MIR168b
:
9e-31
PMRD
sof-miR168b
:
9e-31
microPC
miR168
:
1e-26
UniProt
no hits
RFAM
MIR168: 3e-25
Identical with:
sof-MIR168b
from miRBase (
MNEST042460
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record