ABOUT THIS RECORDspecies: Helianthus argophyllus
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Helianthus argophyllus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTCA mismatches: 1 bulges: 2 |
pre-miRNA
ATGACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((.(((((((((..(((((.......)))))..)))))).......))).)))))))).)))).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATGACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((.(((((((((..(((((.......)))))..)))))).......))).)))))))).)))).))))))).
SIMILARITIES| miRBase osa-MIR156l: 4.0E-6 PMRD stu-miR156a: 4.0E-6 microPC miR156: 7.0E-45 | UniProt no hits RFAM 6mir-156: 8.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
