ABOUT THIS RECORDspecies: Ipomoea batatas
miRNA family: MIR168
source: microPC, original name: miR168
Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGA mismatches: 3 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAGCTCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(((....((((((..((.((..((((....))))..)))).))))))....))).))))).)))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAGCTCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(((....((((((..((.((..((((....))))..)))).))))))....))).))))).)))))))))).)))
SIMILARITIES| miRBase ptc-MIR168b: 0.000001 PMRD hte-miR168: 0.0000003 microPC miR168: 1e-49 | UniProt no hits RFAM MIR168: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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