ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR171a
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* ACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAA mismatches: 9 bulges: 49 |
pre-miRNA
CTGATTGAGCCGCGCCAATATCTCACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAATC
dot-bracket secondary structure
).((((.(((.(((((...........)))))...........((..((((...))))..))....................))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CTGATTGAGCCGCGCCAATATCTCACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAATC
dot-bracket secondary structure
).((((.(((.(((((...........)))))...........((..((((...))))..))....................))).))))
SIMILARITIES| miRBase bdi-MIR171a: 1.0E-6 PMRD ace-miR170a: 2.0E-45 microPC miR171: 0.0003 | UniProt no hits RFAM 1MIR171_1: 2.0E-5 |
Identical with: ace-miR170a from PMRD (MNEST046847) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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