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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046851
species: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR171a

Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGCCAATATC

miRNA*
 ACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAA

mismatches: 9
bulges: 49
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pre-miRNA
 TGATTGAGCCGCGCCAATATCTCACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAATC

dot-bracket secondary structure
.((((.(((.(((((...........)))))...........((..((((...))))..))....................))).))))


SIMILARITIES
miRBase bdi-MIR171a: 0.000001

PMRD ace-miR170a: 2e-45

microPC miR171: 0.0003		UniProt no hits

RFAM MIR171_1: 0.00002

Identical with: ace-miR170a from PMRD (MNEST046847)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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