ABOUT THIS RECORDspecies: Brassica rapa
source: PMRD, original name: bra-miR158
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCAAATGTAGACAAAGCA miRNA* CTTTGTCTATCGTTTGGAAAA mismatches: 2 bulges: 1 |
pre-miRNA
ACGTTATATCTGTTCTTCTTTGTCTATCGTTTGGAAAAGATTGATGACGCTATCTACACTTTTCCAAATGTAGACAAAGCAAAACCGTGATGACGT
dot-bracket secondary structure
(((((((....(((...(((((((((.((((((((((((...((((....))))....)))))))))))))))))))))...)))....)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ACGTTATATCTGTTCTTCTTTGTCTATCGTTTGGAAAAGATTGATGACGCTATCTACACTTTTCCAAATGTAGACAAAGCAAAACCGTGATGACGT
dot-bracket secondary structure
(((((((....(((...(((((((((.((((((((((((...((((....))))....)))))))))))))))))))))...)))....)))))))
SIMILARITIES| miRBase aly-MIR158a: 0.0000000003 PMRD bol-miR158: 0.00000000000008 microPC no hits | UniProt no hits RFAM MIR158: 0.00000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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