miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST048394
species: Brassica rapa
source: PMRD, original name: bra-miR158

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTCCAAATGTAGACAAAGCA

miRNA*
CTTTGTCTATCGTTTGGAAAA

mismatches: 2
bulges: 1

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pre-miRNA
ACGTTATATCTGTTCTTCTTTGTCTATCGTTTGGAAAAGATTGATGACGCTATCTACACTTTTCCAAATGTAGACAAAGCAAAACCGTGATGACGT

dot-bracket secondary structure
(((((((....(((...(((((((((.((((((((((((...((((....))))....)))))))))))))))))))))...)))....)))))))

SIMILARITIES

miRBase aly-MIR158a: 0.0000000003

PMRD bol-miR158: 0.00000000000008

microPC no hits

UniProt no hits

RFAM MIR158: 0.00000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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