ABOUT THIS RECORDspecies: Capsicum annuum
source: PMRD, original name: can-miR156b
Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGGGAGCAC miRNA* GTTTCCTTGAACCATCCAA mismatches: 9 bulges: 1 |
pre-miRNA
ATGGTTTCCTTGAACCATCCAAGGCAGAGTTGATGAAATGCCTGTTGACAGAAGAGAGGGAGCAC
dot-bracket secondary structure
...((((((((......((..(((((............)))))...)).......))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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ATGGTTTCCTTGAACCATCCAAGGCAGAGTTGATGAAATGCCTGTTGACAGAAGAGAGGGAGCAC
dot-bracket secondary structure
...((((((((......((..(((((............)))))...)).......))))))))..
SIMILARITIES| miRBase vvi-MIR156a: 0.000003 PMRD vvi-miR156a: 0.000003 microPC miR156: 0.0002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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