ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIR403
source: PMRD, original name: cpa-miR403
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAGATTCACGCACAAACTCG miRNA* AGTTTGTGCGCGAATCTAATC mismatches: 3 bulges: 0 |
pre-miRNA
GGACGAGGCATATTTCAAGTTTGTGCGCGAATCTAATCCAAAAAAACTCATCACTGAAACAGGCTTCTTGCCTTCATGGCGGGTGTGTGCTAGATTCACG
CACAAACTCGTAATCTGTCTTCGTCT
dot-bracket secondary structure
((((((((((.(((.(.((((((((((.(((((((...((.....((((..((.(((...((((.....)))))))))..))))...)).))))))).))
)))))))).).))).)).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGACGAGGCATATTTCAAGTTTGTGCGCGAATCTAATCCAAAAAAACTCATCACTGAAACAGGCTTCTTGCCTTCATGGCGGGTGTGTGCTAGATTCACG
CACAAACTCGTAATCTGTCTTCGTCT
dot-bracket secondary structure
((((((((((.(((.(.((((((((((.(((((((...((.....((((..((.(((...((((.....)))))))))..))))...)).))))))).))
)))))))).).))).)).))))))))
SIMILARITIES| miRBase tcc-MIR403a: 0.0000000001 PMRD ppl-miR403: 0.0000000001 microPC miR403: 0.000006 | UniProt no hits RFAM MIR403: 3e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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