miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048424
species: Carica papaya
miRNA family: MIR403
source: PMRD, original name: cpa-miR403

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTAGATTCACGCACAAACTCG

miRNA*
 AGTTTGTGCGCGAATCTAATC

mismatches: 3
bulges: 0
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pre-miRNA
 GGACGAGGCATATTTCAAGTTTGTGCGCGAATCTAATCCAAAAAAACTCATCACTGAAACAGGCTTCTTGCCTTCATGGCGGGTGTGTGCTAGATTCACG
CACAAACTCGTAATCTGTCTTCGTCT

dot-bracket secondary structure
((((((((((.(((.(.((((((((((.(((((((...((.....((((..((.(((...((((.....)))))))))..))))...)).))))))).))
)))))))).).))).)).))))))))


SIMILARITIES
miRBase tcc-MIR403a: 0.0000000001

PMRD ppl-miR403: 0.0000000001

microPC miR403: 0.000006		UniProt no hits

RFAM MIR403: 3e-20

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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