ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1161
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTGGAGTTCTCAACAGC miRNA* TGGAGTTCTCAACAGCTAGG mismatches: 3 bulges: 5 |
pre-miRNA
GCCAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTTTGGTTTGGT
dot-bracket secondary structure
(((((.....((((...(((((((((((..(((..(((.((((((........))))))))))))..)))..))).))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTTTGGTTTGGT
dot-bracket secondary structure
(((((.....((((...(((((((((((..(((..(((.((((((........))))))))))))..)))..))).))))).)))))))))
SIMILARITIES| miRBase cre-MIR1161b: 1e-46 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR1161a from miRBase (MNEST039355) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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