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Species belonging to selected taxon:
Chlamydomonas reinhardtii
ABOUT THIS RECORD
ID:
MNEST048459
species:
Chlamydomonas reinhardtii
source:
PMRD, original name:
cre-miR1161
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTGGAGTTCTCAACAGC
miRNA*
TGGAGTTCTCAACAGCTAGG
mismatches:
3
bulges:
5
View larger
pre-miRNA
GCCAGGTGACACCACACACC
TAC
TGGAGTTCTCAACAGC
TAGG
TGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTTTGGTTTGGT
dot-bracket secondary structure
(((((.....((((...(((
(((
(((((..(((..(((.
((((
((........))))))))))))..)))..))).))))).)))))))))
SIMILARITIES
miRBase
cre-MIR1161b
:
1e-46
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
cre-MIR1161a
from miRBase (
MNEST039355
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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