ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR2108
source: PMRD, original name: gma-miR2108b
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAATGTGTTGTGTTTGTGAG miRNA* TGTTAAGCGCAGCGAGTTTTAGGG mismatches: 4 bulges: 3 |
pre-miRNA
GTTTTAATGTGTTGTGTTTGTGAGAACCCCTGATTACATTTTTGTTAAGCGCAGCGAGTTTTAGGGC
dot-bracket secondary structure
(((((((..(((((((((((..((((............))))..).))))))))))....)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
GTTTTAATGTGTTGTGTTTGTGAGAACCCCTGATTACATTTTTGTTAAGCGCAGCGAGTTTTAGGGC
dot-bracket secondary structure
(((((((..(((((((((((..((((............))))..).))))))))))....)))))))
SIMILARITIES| miRBase gma-MIR2108b: 2e-32 PMRD gma-miR2108a: 6e-20 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR2108b from miRBase (MNEST040538) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
