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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST048626
species:
Glycine max
miRNA family:
MIR2108
source:
PMRD, original name:
gma-miR2108b
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAATGTGTTGTGTTTGTGAG
miRNA*
TGTTAAGCGCAGCGAGTTTTAGGG
mismatches:
4
bulges:
3
View larger
pre-miRNA
GTT
TTAATGTGTTGTGTTTGTGAG
AACCCCTGATTACATTTT
TGTTAAGCGCAGCGAGTTTTAGGG
C
dot-bracket secondary structure
(((
((((..(((((((((((..((
((............))))
..).))))))))))....))))))
)
SIMILARITIES
miRBase
gma-MIR2108b
:
2e-32
PMRD
gma-miR2108a
:
6e-20
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
gma-MIR2108b
from miRBase (
MNEST040538
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X,
Biochem Biophys Res Commun. 378:799-803(2009).
,
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"