ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR2118
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCCGATTCCACCCATTCCTA miRNA* GGAGATGGGAGGGTCGGTAAAG mismatches: 1 bulges: 2 |
pre-miRNA
GAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGAATATATCTGAGACTCGACTCAATCTCGATCTCTCTCAGTGTTGTGTTGTTTTGTTTATCCTTTTG
CCGATTCCACCCATTCCTATGATTTCCTT
dot-bracket secondary structure
((((((((.(((((((.((((.((((((((((((((((((.((((((.((((.......))))....))))))...)))))).............)))))
)))).))).))))))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
degradome data
download this record
deep sequencing data evidence
GAGGAAGTGATGGGAGATGGGAGGGTCGGTAAAGAATATATCTGAGACTCGACTCAATCTCGATCTCTCTCAGTGTTGTGTTGTTTTGTTTATCCTTTTG
CCGATTCCACCCATTCCTATGATTTCCTT
dot-bracket secondary structure
((((((((.(((((((.((((.((((((((((((((((((.((((((.((((.......))))....))))))...)))))).............)))))
)))).))).))))))))))).))))))))
SIMILARITIES| miRBase gso-MIR2218: 0.000000000000002 PMRD vun-miR2118: 3e-69 microPC no hits | UniProt no hits RFAM no hits |
Identical with: vun-miR2118 from PMRD (MNEST054765) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
degradome data
download this record
deep sequencing data evidence
