ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR171
source: PMRD, original name: gra-miR171
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* CTTGCGCGAGTACCGGATCACCGGTTTCGATCAGC mismatches: 9 bulges: 16 |
pre-miRNA
ATGATTGAGCCGCGCCAATATCCCTTGCGCGAGTACCGGATCACCGGTTTCGATCAGCTCTGCGGCCTGAATTAATTGGTCTATTATTGCCTGCTGAAGCT
GTTGGTTCGCCATTTCA
dot-bracket secondary structure
)(((((((..(((((...........)))))...(((((....))))).))))))).......(((..((((((((.(((........))).((....)).
)))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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ATGATTGAGCCGCGCCAATATCCCTTGCGCGAGTACCGGATCACCGGTTTCGATCAGCTCTGCGGCCTGAATTAATTGGTCTATTATTGCCTGCTGAAGCT
GTTGGTTCGCCATTTCA
dot-bracket secondary structure
)(((((((..(((((...........)))))...(((((....))))).))))))).......(((..((((((((.(((........))).((....)).
)))))))))))......
SIMILARITIES| miRBase bdi-MIR171a: 2.0E-5 PMRD ath-miR171n: 2.0E-11 microPC miR171: 0.0004 | UniProt no hits RFAM 1MIR171_1: 0.0001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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