miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST048636
species: Gossypium raimondii
miRNA family: MIR171
source: PMRD, original name: gra-miR171

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
CTTGCGCGAGTACCGGATCACCGGTTTCGATCAGC

mismatches: 9
bulges: 16

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pre-miRNA
TGATTGAGCCGCGCCAATATCCCTTGCGCGAGTACCGGATCACCGGTTTCGATCAGCTCTGCGGCCTGAATTAATTGGTCTATTATTGCCTGCTGAAGCT
GTTGGTTCGCCATTTCA

dot-bracket secondary structure
(((((((..(((((...........)))))...(((((....))))).))))))).......(((..((((((((.(((........))).((....)).
)))))))))))......

UniProt no hits

RFAM MIR171_1: 0.0001

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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