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ABOUT THIS RECORD

ID: MNEST048636
species: Gossypium raimondii
miRNA family: MIR171
source: PMRD, original name: gra-miR171

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGCCAATATC

miRNA*
 CTTGCGCGAGTACCGGATCACCGGTTTCGATCAGC

mismatches: 9
bulges: 16
View larger
pre-miRNA
 TGATTGAGCCGCGCCAATATCCCTTGCGCGAGTACCGGATCACCGGTTTCGATCAGCTCTGCGGCCTGAATTAATTGGTCTATTATTGCCTGCTGAAGCT
GTTGGTTCGCCATTTCA

dot-bracket secondary structure
(((((((..(((((...........)))))...(((((....))))).))))))).......(((..((((((((.(((........))).((....)).
)))))))))))......


SIMILARITIES
miRBase bdi-MIR171a: 0.00002

PMRD ath-miR171n: 0.00000000002

microPC miR171: 0.0004		UniProt no hits

RFAM MIR171_1: 0.0001

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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